Search Cottages in San Juan Island

  • Plan, book, stay with confidence

  • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Check prices for these dates

Next weekend
In two weeks
In one month
In two months

5⭐Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey

10.0 out of 10, Exceptional, (202)
"Loved it"
5⭐Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey

Cottage by the Sea Su

9.6 out of 10, Exceptional, (129)
"We stayed at this cute cottage on Christmas Day to visit with family nearby. The views of the water are amazing, and the cottage is clean and cozy. Hosts were very welcoming and friendly. Would definitely stay here again!"
The price is HK$1,019
HK$1,857 total
includes taxes & fees
27 Jan - 28 Jan
Cottage by the Sea Su

Dog-Friendly Cottage with hot tub, kayaks, e-bike

10.0 out of 10, Exceptional, (17)
"Cute house with peekaboo water views. Quick drive to town in quiet neighborhood. Would stay here again. "
Dog-Friendly Cottage with hot tub, kayaks, e-bike

A Charming And Artistic Cottage Set In a Beautiful Garden

9.8 out of 10, Exceptional, (176)
"The Foxglove Cottage is delightful. Beautiful setting, cozy and whimsical. Morning walks in the gardens and snug evenings around the fireplace in the quaint living room. The kitchen is well appointed and beds comfortable. Delightful stay!"
A Charming And Artistic Cottage Set In a Beautiful Garden

Waterfront cabin with hot tub, WiFi, deck, & wildlife views - dog-friendly

9.8 out of 10, Exceptional, (117)
"We had a sibling reunion and the cabin worked beautifully for four couples. Kitchen was cozy but the bedrooms (especially upstairs) were spacious and comfortable. We’d stay here again!"
Waterfront cabin with hot tub, WiFi, deck, & wildlife views - dog-friendly

Cottage-in-the-Barn on Dragonfly Farm

10.0 out of 10, Exceptional, (134)
"This is where you want to stay on orcas Island. Centrally located and secluded. Easy to get to and the accommodations in the cottage are spectacular. Everything you need in the kitchen to make a nice meal. The garden provided us with an onion and celery. A really nice treat."
Cottage-in-the-Barn on Dragonfly Farm

The Little Pink House by Avantstay Water Views

3.0 star property
10.0 out of 10, Exceptional, (2)
"Perfect for a short weekend with family "
The Little Pink House by Avantstay Water Views

Bramble Seaview Cottage - Lower Studio Suite With Sparkly Water View

10.0 out of 10, Exceptional, (61)
"Very cozy. Nicely decorated, very clean"
Bramble Seaview Cottage - Lower Studio Suite With Sparkly Water View

Orcas Island, Marina View #201

9.6 out of 10, Exceptional, (88)
"Are stay was wonderful, the peace you feel as soon as you arrive. We stayed 2 weeks. The wild life was wonderful to watch. The only negative is that the furniture in the living room needs to be up dated. Very old and uncomfortable."
Orcas Island, Marina View #201

Orcas Island, Crescent Beach Cottage #252

9.4 out of 10, Exceptional, (20)
"Wonderful property and we have returned many times. Beautifully appointed with charming English garden. Only negative was we were given wrong key lockbox code and took 30mins of holding on telephone before we got a live person at 11pm who was able to get property manager. Rest of stay was excellent."
Orcas Island, Crescent Beach Cottage #252

Woods Lake Cottage

10.0 out of 10, Exceptional, (24)
"Yvonne’s cabin was everything we needed for our stay. she was very helpful and we would definitely love to go back again!"
Woods Lake Cottage

Waterfront Luxury, Hot Tub,Fast Internet, Mooring

9.8 out of 10, Exceptional, (7)
"After a brief glitch when I didn't receive check-in instructions from VRBO, everything else was great. Very comfy house that was totally private and quiet. I'm an author, and was undisturbed and able to work on my book in progress. The views and the wildlife added to my serenity. One caution: if you are petite, ask for a stepstool to get into the bed; it is very high. Sherri, the host, is professional and responsive. "
Waterfront Luxury, Hot Tub,Fast Internet, Mooring

Lopez Island, Cottage at Shark Reef #222

9.4 out of 10, Exceptional, (26)
"We loved our stay! The views from inside and out are amazing. We were treated to one spectacular sunset and lots of wildlife sightings. We loved the privacy and solitude and would happily return for another visit"
Lopez Island, Cottage at Shark Reef #222

Oak Harbor Hideaway - 5 Mi to Deception Pass!

3.0 star property
Oak Harbor Hideaway - 5 Mi to Deception Pass!

Penn Cove Overlook by Avantstay Cabin w/ Views

3.0 star property
10.0 out of 10, Exceptional, (1)
"Really loved how private and quiet it was. It was so cute and comfortable. Would love to go back and stay longer."
Penn Cove Overlook by Avantstay Cabin w/ Views

Beachfront cottage on Buoy Bay w/ beach access & boat moor

9.8 out of 10, Exceptional, (101)
"Super sweet views of the water, islands, & sky. Very nice private beach, and peaceful setting. The kitchen is well equipped. Bed was comfortable, couch and chairs were comfortable. The code to the door didn’t work, and after trying it numerous times, we texted Vacasa and they responded with a different code for the lock box which got us in with a key. The light above the stove, under the microwave was burned out, so cooking was dimly lit. I’m sure they will replace the bulb tho. The coffee...
Beachfront cottage on Buoy Bay w/ beach access & boat moor

Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.

10.0 out of 10, Exceptional, (87)
"It was a lovely time. The cottage had everything we needed. And it was very clean, warm and cozy."
Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.

NEW: Here's a perfect spot to kick back, relax and watch the day cruise by

9.6 out of 10, Exceptional, (36)
"My sisters and I thoroughly enjoyed our stay at Cornet Bay Cottage. We really liked the large windows in the front of the house overlooking Cornet Bay. "
NEW: Here's a perfect spot to kick back, relax and watch the day cruise by

Stunning waterfront 4BR home with fantastic views, manicured garden, & firepit

9.4 out of 10, Exceptional, (75)
"This home was lovely. We will be back. We had Della contact us prior to check in and communicate when needed throughout the trip. There was a plumbing and gate issue that was both communicated early, expectations set and addressed immediately. She kindly provided compensation for the issues. The house is just as advertised and we had a lovely time during our stay. "
Stunning waterfront 4BR home with fantastic views, manicured garden, & firepit

Lovely water and garden views. Two minutes drive to beaches, six to either town!

10.0 out of 10, Exceptional, (41)
"My wife and I really enjoyed this space as we got away from the city for a few days. The size was perfect where we didn’t feel right on top of each other, but were cozy in the small cottage together. The space was as advertised, and had everything we felt like we needed for our time away."
Lovely water and garden views. Two minutes drive to beaches, six to either town!
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in San Juan Island
Save an average of 15% on thousands of hotels when you're signed in

Other property types in San Juan Island

Secluded 4BR Retreat | Wellness, Hot Tub & Pet Friendly

10.0 out of 10, Exceptional, (21)
"Our construction crew stayed at the house while working on a street project. They enjoyed the hot tub, board games and all the other stuff available. Plenty of hot water, towels and blankets! Enough room for everyone to have their own space."
The price is HK$1,682
HK$4,547 total
includes taxes & fees
2 Feb - 3 Feb
Secluded 4BR Retreat | Wellness, Hot Tub & Pet Friendly

Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Stunning View!

9.6 out of 10, Exceptional, (195)
"We love this house on San Juan Island. This was our second time staying at the house and the kids are begging to go back. The house is comfortable and has a great table for family dinners, board games and puzzles. The beach and property are just fantastic. The lack of internet is a small ding in my mind though it is helpful to get the kids off screens. Jenny was very responsive and helpful when we had an issue. Strongly recommend for some quiet downtime."
Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Stunning View!

Utter Seclusion on 600 Feet of Waterfront , Free WiFi

9.8 out of 10, Exceptional, (178)
"The place was nice and clean. It felt very secluded but was only 10 min from town!"
Utter Seclusion on 600 Feet of Waterfront , Free WiFi
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some superb cottages in San Juan Island, so start packing your bags for a memorable stay close to nature. If you have a fixed budget, click on how much you’d like to spend and your preferred property star rating. Or, use our filters to search for cottages with a kitchen or a pool. We’ll help you find the perfect pad whatever your style of travel or plans.
How can I find cheap cottages in San Juan Island?
With Expedia’s filter tool, getting your hands on cheap cottages in San Juan Island is a snap. To find stays that’ll make your wallet smile, tailor your search results by amenities, star rating and budget.